STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ47624.1PFAM: Pentapeptide repeats (8 copies); Choristoneura fumiferana antifreeze protein (CfAFP); COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: syp:SYNPCC7002_A2258 pentapeptide repeat-containing protein; PFAM: pentapeptide repeat protein; SPTR: Pentapeptide repeat protein. (275 aa)    
Predicted Functional Partners:
AFZ47982.1
PFAM: Pentapeptide repeats (8 copies); InterPro IPR001646; KEGG: npu:Npun_F4955 pentapeptide repeat-containing protein; PFAM: pentapeptide repeat protein; SPTR: Pentapeptide repeat protein.
  
     0.755
AFZ47625.1
TIGRFAM: conserved hypothetical protein; COGs: COG4370 conserved hypothetical protein; InterPro IPR019994; KEGG: cyp:PCC8801_0291 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: conserved hypothetical protein.
       0.754
AFZ47623.1
KEGG: cyc:PCC7424_2348 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.746
AFZ46770.1
PFAM: Pentapeptide repeats (8 copies); InterPro IPR001646; KEGG: mar:MAE_02140 hypothetical protein; PFAM: pentapeptide repeat protein; SPTR: Genome sequencing data, contig C326.
  
     0.688
AFZ47626.1
Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: cyc:PCC7424_2845 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, winged helix family.
       0.520
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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