STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ47792.1PFAM: Protein of unknown function (DUF455); KEGG: mar:MAE_19790 hypothetical protein; SPTR: Putative uncharacterized protein. (285 aa)    
Predicted Functional Partners:
AFZ47096.1
COGs: COG3411 Ferredoxin; KEGG: amr:AM1_B0126 iron-sulfur cluster-binding protein, putative; SPTR: Iron-sulfur cluster-binding protein, putative.
  
     0.553
AFZ47791.1
Protein of unknown function UPF0157; PFAM: Uncharacterised protein family (UPF0157); KEGG: gwc:GWCH70_1602 protein of unknown function UPF0157; SPTR: Putative uncharacterized protein.
       0.532
AFZ48256.1
PFAM: Phycobilisome degradation protein nblA; InterPro IPR007574; KEGG: npu:Npun_R3808 phycobilisome degradation protein NblA; PFAM: Phycobilisome degradation protein nblA; SPTR: Phycobilisome degradation protein.
  
     0.475
AFZ46247.1
PFAM: Protein of unknown function (DUF3038); KEGG: cyc:PCC7424_4010 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.472
AFZ48547.1
PFAM: Domain of unknown function DUF; InterPro IPR003807; KEGG: cyh:Cyan8802_4468 protein of unknown function DUF202; PFAM: protein of unknown function DUF202; SPTR: Putative uncharacterized protein.
  
     0.464
AFZ47097.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: amr:AM1_B0127 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor.
  
     0.456
rpmH
PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; InterPro IPR000271; KEGG: syn:smr0011 50S ribosomal protein L34; PFAM: ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
  
     0.435
AFZ47527.1
PFAM: Phycobilisome Linker polypeptide; CpcD/allophycocyanin linker domain; InterPro IPR001297:IPR008213:IPR016470; KEGG: cyp:PCC8801_4529 phycobilisome linker polypeptide; PFAM: Phycobilisome linker polypeptide; CpcD phycobilisome linker domain protein; SPTR: Phycobilisome linker polypeptide:CpcD phycobilisome linker-like; Belongs to the phycobilisome linker protein family.
  
     0.420
AFZ48194.1
KEGG: ana:asr2939 hypothetical protein; SPTR: Asr2939 protein.
  
     0.414
AFZ47790.1
TIGRFAM: DNA binding domain, excisionase family; InterPro IPR010093; KEGG: acr:Acry_3279 DNA binding domain-containing protein; SPTR: DNA binding domain, excisionase family protein; TIGRFAM: DNA binding domain protein, excisionase family.
 
     0.410
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.