STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ47856.1Agmatinase; PFAM: Arginase family; TIGRFAM: agmatinase; COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR005925:IPR006035:IPR020855; KEGG: syp:SYNPCC7002_A1109 agmatinase, putative; PFAM: Arginase/agmatinase/formiminoglutamase; SPTR: Agmatinase, putative; TIGRFAM: agmatinase; Belongs to the arginase family. (298 aa)    
Predicted Functional Partners:
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
 
 
 0.941
AFZ47238.1
Agmatinase; PFAM: Arginase family; TIGRFAM: agmatinase; COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR005924:IPR006035:IPR020855; KEGG: cyc:PCC7424_5245 agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; PRIAM: Agmatinase; SPTR: Arginase family; Belongs to the arginase family.
  
  
 
0.926
AFZ47855.1
PFAM: Glycosyl transferase family 2; InterPro IPR001173; KEGG: mar:MAE_06070 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Similar to tr|Q116L6|Q116L6_TRIEI Glycosyl transferase.
       0.603
AFZ47363.1
PFAM: Orn/Lys/Arg decarboxylase, C-terminal domain; Orn/Lys/Arg decarboxylase, major domain; COGs: COG1982 Arginine/lysine/ornithine decarboxylase; InterPro IPR000310:IPR008286; KEGG: cyh:Cyan8802_2389 Orn/Lys/Arg decarboxylase major region; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; SPTR: Orn/Lys/Arg decarboxylase major region.
    
 0.585
AFZ48453.1
PFAM: Proline dehydrogenase; Aldehyde dehydrogenase family; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR002872:IPR015590:IPR016160:IPR005932; KEGG: cyc:PCC7424_1002 delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase; SPTR: Delta-1-pyrroline-5-carboxylate dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; L-proline dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.572
AFZ47857.1
Hypothetical protein; KEGG: mcc:709742 similar to PTPRF interacting protein binding protein 1 isoform 1; SPTR: cDNA FLJ54647, highly similar to Liprin-beta-1.
       0.538
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
 
  
 0.517
AFZ48036.1
PFAM: LOR/SDH bifunctional enzyme conserved region; Amidinotransferase; TIGRFAM: TIGR00300 family protein; COGs: COG1915 conserved hypothetical protein; InterPro IPR005239:IPR003198:IPR007545; KEGG: cyh:Cyan8802_3360 LOR/SDH bifunctional protein conserved domain protein; PFAM: LOR/SDH bifunctional protein conserved domain protein; amidinotransferase; SPTR: LOR/SDH bifunctional protein conserved domain protein.
     
 0.505
argD
PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine transaminases; COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR004636:IPR005814; KEGG: cyc:PCC7424_5154 acetylornithine aminotransferase; PFAM: aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Acetylornithine and succinylornithine aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.501
rpiA
Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.471
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.