STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ47857.1Hypothetical protein; KEGG: mcc:709742 similar to PTPRF interacting protein binding protein 1 isoform 1; SPTR: cDNA FLJ54647, highly similar to Liprin-beta-1. (123 aa)    
Predicted Functional Partners:
rpiA
Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.668
AFZ47856.1
Agmatinase; PFAM: Arginase family; TIGRFAM: agmatinase; COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR005925:IPR006035:IPR020855; KEGG: syp:SYNPCC7002_A1109 agmatinase, putative; PFAM: Arginase/agmatinase/formiminoglutamase; SPTR: Agmatinase, putative; TIGRFAM: agmatinase; Belongs to the arginase family.
       0.538
AFZ47855.1
PFAM: Glycosyl transferase family 2; InterPro IPR001173; KEGG: mar:MAE_06070 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Similar to tr|Q116L6|Q116L6_TRIEI Glycosyl transferase.
       0.430
AFZ47859.1
Orange carotenoid-binding protein; PFAM: Nuclear transport factor 2 (NTF2) domain; Orange carotenoid protein, N-terminal; InterPro IPR015233:IPR002075; KEGG: cyc:PCC7424_4467 orange carotenoid protein; PFAM: Orange carotenoid-binding protein; nuclear transport factor 2; SPTR: Water-soluble carotenoid protein.
       0.429
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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