STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ47997.1GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family; InterPro IPR000182; KEGG: rpe:RPE_1488 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase, GNAT family. (167 aa)    
Predicted Functional Partners:
AFZ47996.1
PFAM: Protein of unknown function (DUF1778); InterPro IPR014795; KEGG: cyc:PCC7424_4340 hypothetical protein; PFAM: protein of unknown function DUF1778; SPTR: Putative uncharacterized protein.
       0.773
AFZ47998.1
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
       0.596
AFZ47999.1
PFAM: Tellurite resistance protein TerB; KEGG: cyt:cce_0541 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
       0.596
AFZ48500.1
CoA-binding domain protein; PFAM: CoA binding domain; ATP-grasp domain; Acetyltransferase (GNAT) family; TIGRFAM: acetyl coenzyme A synthetase (ADP forming), alpha domain; COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterPro IPR011761:IPR000182:IPR003781:IPR013650; KEGG: ana:all0769 acetyl-CoA synthetase; PFAM: CoA-binding domain protein; ATP-grasp domain protein; GCN5-related N-acetyltransferase; SPTR: Acetyl-CoA synthetase.
 
  
 0.520
rplT
LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
       0.498
AFZ48445.1
PFAM: Histone deacetylase domain; COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: cyc:PCC7424_1532 histone deacetylase superfamily; PFAM: histone deacetylase superfamily; PRIAM: Histone deacetylase; SPTR: Histone deacetylase superfamily.
  
  
 0.427
AFZ47776.1
PilT protein domain protein; PFAM: PIN domain; COGs: COG3744 conserved hypothetical protein; InterPro IPR002716; KEGG: npu:Npun_R6079 PilT domain-containing protein; PFAM: PilT protein domain protein; SPTR: PilT protein domain protein.
  
     0.405
rpmI
PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35; InterPro IPR001706:IPR021137:IPR018265; KEGG: syn:ssl1426 50S ribosomal protein L35; PFAM: Ribosomal protein L35; SPTR: 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; manually curated; Belongs to the bacterial ribosomal protein bL35 family.
       0.405
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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