STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ48112.1Lipopolysaccharide biosynthesis protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; COGs: COG0489 ATPase involved in chromosome partitioning; KEGG: cyp:PCC8801_2514 lipopolysaccharide biosynthesis protein; SPTR: Lipopolysaccharide biosynthesis protein. (756 aa)    
Predicted Functional Partners:
AFZ48111.1
PFAM: Polysaccharide biosynthesis/export protein; SLBB domain; COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715:IPR019554; KEGG: cyt:cce_4188 hypothetical protein; PFAM: polysaccharide export protein; Soluble ligand binding domain; SPTR: Putative uncharacterized protein.
 
 
 0.999
AFZ47647.1
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: Bacterial sugar transferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: cyc:PCC7424_5291 undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Putative uncharacterized protein.
 
  
 0.913
AFZ47532.1
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: Bacterial sugar transferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: cyt:cce_3234 undecaprenyl-phosphate galactosephosphotransferase; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.901
AFZ47473.1
KEGG: cyt:cce_0252 hypothetical protein; SPTR: Putative uncharacterized protein.
 
  
 0.878
AFZ48597.1
KEGG: cyh:Cyan8802_4259 hypothetical protein; SPTR: Putative uncharacterized protein.
 
  
 0.876
AFZ47474.1
PFAM: Glycosyl transferase family 2; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: mar:MAE_49200 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2.
 
  
 0.875
AFZ48109.1
PFAM: Transmembrane exosortase (Exosortase_EpsH); TIGRFAM: exosortase/archaeosortase family protein; cyanoexosortase B; exosortase; InterPro IPR019127:IPR013426; KEGG: ter:Tery_2693 eight transmembrane protein EpsH; PFAM: Exosortase EpsH-related; SPTR: Similar to tr|Q8YZG3|Q8YZG3; TIGRFAM: eight transmembrane protein EpsH.
 
    0.874
AFZ48110.1
KEGG: cyh:Cyan8802_3594 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.870
AFZ47555.1
PFAM: Glycosyl transferase family 2; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: cyh:Cyan8802_2151 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2.
 
  
 0.815
AFZ47447.1
PFAM: Glycosyl transferase family 2; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: ter:Tery_4588 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase, family 2.
 
  
 0.797
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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