STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ48237.1RNP-1 like RNA-binding protein; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro IPR000504; KEGG: mar:MAE_02510 RNA-binding protein; SMART: RNP-1 like RNA-binding protein; SPTR: RNA-binding protein. (171 aa)    
Predicted Functional Partners:
gpmI
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
 0.868
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
  0.831
AFZ46540.1
PFAM: Protein of function (DUF2518); InterPro IPR019664; KEGG: cyt:cce_3967 hypothetical protein; PFAM: Protein of unknown function DUF2518; SPTR: Putative uncharacterized protein.
  
     0.771
AFZ46903.1
KEGG: mar:MAE_35130 transcriptional regulator; SPTR: Transcriptional regulator.
  
     0.771
AFZ48631.1
KEGG: cyc:PCC7424_3505 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.759
AFZ47523.1
PFAM: Protein of unknown function (DUF2555); InterPro IPR019678; KEGG: cyt:cce_2060 hypothetical protein; PFAM: Protein of unknown function DUF2555; SPTR: Putative uncharacterized protein; manually curated.
  
     0.758
AFZ48803.1
Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily; COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR001307; KEGG: cyc:PCC7424_1448 beta-lactamase domain protein; SPTR: Beta-lactamase domain protein.
  
 0.754
AFZ46210.1
Carbon dioxide concentrating mechanism protein; PFAM: Bacterial transferase hexapeptide (three repeats); InterPro IPR001451; KEGG: mar:MAE_47900 carbon dioxide concentrating mechanism protein; SPTR: Genome sequencing data, contig C303.
  
     0.752
AFZ47298.1
PFAM: Fimbrial assembly protein (PilN); COGs: COG3166 Tfp pilus assembly protein PilN; InterPro IPR007813; KEGG: cyh:Cyan8802_4211 fimbrial assembly family protein; PFAM: Fimbrial assembly family protein; SPTR: Fimbrial assembly family protein.
  
     0.745
AFZ46097.1
PFAM: Protein of unknown function (DUF3288); KEGG: cyn:Cyan7425_2640 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.744
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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