STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ48271.1PFAM: Predicted permease YjgP/YjgQ family; COGs: COG0795 permease; InterPro IPR005495; KEGG: cyt:cce_2027 putative permease YjgP/YjgQ; PFAM: permease YjgP/YjgQ family protein; SPTR: Putative permease YjgP/YjgQ. (386 aa)    
Predicted Functional Partners:
AFZ48272.1
PFAM: ABC transporter; COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: syp:SYNPCC7002_A0769 ABC-type transport protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC-type transport protein.
 
 
 0.998
AFZ47872.1
PFAM: Predicted permease YjgP/YjgQ family; COGs: COG0795 permease; InterPro IPR005495; KEGG: cyh:Cyan8802_0135 permease YjgP/YjgQ family protein; PFAM: permease YjgP/YjgQ family protein; SPTR: Permease YjgP/YjgQ family protein.
  
  
 
0.908
AFZ46897.1
PFAM: Protein of unknown function (DUF1239); InterPro IPR010664; KEGG: cyc:PCC7424_0097 protein of unknown function DUF1239; PFAM: protein of unknown function DUF1239; SPTR: Putative uncharacterized protein.
  
 
 0.892
AFZ47189.1
Resolvase RNase H domain protein fold protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
 
     0.768
AFZ48588.1
PFAM: Surface antigen variable number repeat; POTRA domain, ShlB-type; Surface antigen; TIGRFAM: chloroplast envelope protein translocase, IAP75 family; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184:IPR008162; KEGG: cyc:PCC7424_2608 surface antigen (D15); PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; SPTR: Surface antigen (D15).
 
     0.765
AFZ47728.1
PFAM: Carbohydrate-selective porin, OprB family; S-layer homology domain; InterPro IPR001119:IPR007049; KEGG: cyc:PCC7424_4705 carbohydrate-selective porin OprB; PFAM: S-layer domain-containing protein; Carbohydrate-selective porin OprB; SPTR: Carbohydrate-selective porin OprB; TC 1.B.23; Belongs to the OprB family.
  
     0.743
AFZ47398.1
PFAM: Carbohydrate-selective porin, OprB family; S-layer homology domain; InterPro IPR001119:IPR007049; KEGG: syn:slr1908 hypothetical protein; PFAM: Carbohydrate-selective porin OprB; S-layer domain-containing protein; SPTR: Carbohydrate-selective porin, OprB family; TC 1.B.23; Belongs to the OprB family.
  
     0.739
AFZ46241.1
PFAM: Carbohydrate-selective porin, OprB family; S-layer homology domain; InterPro IPR001119:IPR007049; KEGG: ava:Ava_2510 S-layer region-like; PFAM: Carbohydrate-selective porin OprB; S-layer domain-containing protein; SPTR: All7614 protein; TC 1.B.23; Belongs to the OprB family.
  
     0.733
AFZ48184.1
PFAM: Carbohydrate-selective porin, OprB family; S-layer homology domain; InterPro IPR001119:IPR007049; KEGG: mar:MAE_10010 porin type major outer membrane protein; PFAM: Carbohydrate-selective porin OprB; S-layer domain-containing protein; SPTR: Porin type major outer membrane protein; TC 1.B.23; Belongs to the OprB family.
  
     0.730
AFZ48672.1
PFAM: Carbohydrate-selective porin, OprB family; S-layer homology domain; InterPro IPR001119:IPR007049; KEGG: cyt:cce_3517 S-layer OprB family carbohydrate-selective porin; PFAM: Carbohydrate-selective porin OprB; S-layer domain-containing protein; SPTR: Carbohydrate-selective porin, OprB family; TC 1.B.23; Belongs to the OprB family.
  
     0.730
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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