STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ48473.1KEGG: cyn:Cyan7425_2479 hypothetical protein; SPTR: Putative uncharacterized protein. (351 aa)    
Predicted Functional Partners:
AFZ48474.1
PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein; COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: cyc:PCC7424_3003 protein of unknown function DUF140; PFAM: protein of unknown function DUF140; SPTR: Putative uncharacterized protein.
  
    0.686
AFZ48713.1
Hypothetical protein; PFAM: HTH domain; COGs: COG2378 transcriptional regulator protein; KEGG: cyt:cce_1192 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.646
secA
Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
    
 
 0.612
rpsN
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
 
 0.589
AFZ47741.1
PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter; COGs: COG3965 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: cyt:cce_2685 putative cation efflux protein; PFAM: cation efflux protein; SPTR: Putative cation efflux protein; TIGRFAM: cation diffusion facilitator family transporter.
  
     0.563
AFZ46639.1
KEGG: cyn:Cyan7425_3171 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.553
AFZ46285.1
Hypothetical protein; PFAM: Macro domain; KEGG: rca:Rcas_0073 hypothetical protein; SPTR: Putative uncharacterized protein.
   
    0.548
AFZ48472.1
PFAM: Amidohydrolase family; COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: pnu:Pnuc_0696 amidohydrolase; PFAM: amidohydrolase; SPTR: Amidohydrolase.
       0.546
rpmH
PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; InterPro IPR000271; KEGG: syn:smr0011 50S ribosomal protein L34; PFAM: ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
  
 
   0.503
AFZ48287.1
PFAM: Protein of unknown function (DUF3118); KEGG: cyn:Cyan7425_2169 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.501
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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