STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ48490.1Protein of unknown function DUF540; PFAM: Etoposide-induced protein 2.4 (EI24); COGs: COG2981 Uncharacterized protein involved in cysteine biosynthesis; KEGG: cyc:PCC7424_2099 protein of unknown function DUF540; SPTR: Putative uncharacterized protein. (270 aa)    
Predicted Functional Partners:
AFZ48013.1
PFAM: Late competence development protein ComFB; InterPro IPR019657; KEGG: syn:slr1505 hypothetical protein; PFAM: Late competence development protein ComFB; SPTR: Slr1505 protein.
  
     0.552
AFZ48491.1
KEGG: cyh:Cyan8802_1183 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.529
AFZ46305.1
KEGG: syp:SYNPCC7002_A0731 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.518
AFZ47689.1
Hypothetical protein; PFAM: Domain of unknown function (DUF1868); KEGG: cyh:Cyan8802_4219 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.499
AFZ46226.1
KEGG: ter:Tery_2785 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.460
AFZ47026.1
KEGG: cyc:PCC7424_2923 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.427
AFZ48115.1
PFAM: CheW-like domain; InterPro IPR002545; KEGG: cyc:PCC7424_2779 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; SPTR: CheW protein.
  
     0.416
AFZ48459.1
DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase domain; COGs: COG1669 nucleotidyltransferase; InterPro IPR002934; KEGG: cyc:PCC7424_3907 DNA polymerase beta domain protein region; PFAM: DNA polymerase beta domain protein region; SPTR: DNA polymerase beta domain protein region.
  
     0.416
AFZ48425.1
KEGG: cyt:cce_0203 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.409
AFZ47341.1
TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; InterPro IPR006260; KEGG: cyc:PCC7424_0339 TonB family protein; SPTR: TonB family protein; TIGRFAM: TonB family protein.
  
     0.405
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.