STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ48528.1PFAM: HupE / UreJ protein; COGs: COG2370 Hydrogenase/urease accessory protein; KEGG: cyt:cce_0951 hydrogenase accessory protein; SPTR: Hydrogenase accessory protein. (214 aa)    
Predicted Functional Partners:
rpmH
PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; InterPro IPR000271; KEGG: syn:smr0011 50S ribosomal protein L34; PFAM: ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
  
     0.547
AFZ48529.1
PFAM: Cytochrome P450; COGs: COG2124 Cytochrome P450; InterPro IPR001128:IPR017972:IPR002401:IPR017973; KEGG: cyt:cce_3728 cytochrome P450; PFAM: cytochrome P450; SPTR: Cytochrome P450.
       0.541
AFZ48527.1
KEGG: cyh:Cyan8802_0852 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.510
psaK
PFAM: Photosystem I psaG / psaK; TIGRFAM: photosystem I reaction center subunit PsaK; InterPro IPR000549:IPR017492; KEGG: syf:Synpcc7942_0407 photosystem I reaction center subunit X; PFAM: photosystem I psaG/psaK protein; SPTR: Photosystem I reaction center subunit X; TIGRFAM: photosystem I reaction center subunit PsaK.
  
     0.486
psaK-2
PFAM: Photosystem I psaG / psaK; TIGRFAM: photosystem I reaction center subunit PsaK; InterPro IPR017492:IPR000549; KEGG: cyt:cce_0400 photosystem I reaction center subunit X; PFAM: photosystem I psaG/psaK protein; SPTR: Photosystem I reaction center subunit X; TIGRFAM: photosystem I reaction center subunit PsaK.
  
     0.484
AFZ48508.1
PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; COGs: COG2242 Precorrin-6B methylase 2; InterPro IPR006365:IPR000878:IPR012818:IPR014008; KEGG: cyh:Cyan8802_1505 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; PRIAM: Precorrin-6Y C(5,15)-methyltransferase (decarboxylating); SPTR: Precorrin-6y C5,15-methyltransferase (Decarboxylating), CbiE s [...]
     
 0.482
AFZ48429.1
KEGG: cyc:PCC7424_0507 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.480
AFZ47518.1
PFAM: Urease beta subunit; TIGRFAM: urease, beta subunit; COGs: COG0832 Urea amidohydrolase (urease) beta subunit; InterPro IPR002019; KEGG: mar:MAE_45230 urease beta subunit; PFAM: Urease beta subunit; PRIAM: Urease; SPTR: Urease subunit beta; TIGRFAM: urease, beta subunit.
  
  
 0.477
AFZ46263.1
KEGG: cyh:Cyan8802_0874 high intensity light-inducible lhc-like protein; SPTR: Possible high light inducible polypeptide HliC.
  
     0.474
psbL
Photosystem II protein PsbL; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. This subunit is found at the monomer-monomer interface and is required for correct PSII assembly and/or dimerization.
  
     0.469
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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