STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ48556.1Transposase IS891/IS1136/IS1341 family; PFAM: Helix-turn-helix domain; Putative transposase DNA-binding domain; Probable transposase; COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR001959:IPR010095; KEGG: mar:MAE_44590 transposase; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; SPTR: Transposase. (407 aa)    
Predicted Functional Partners:
AFZ48557.1
PFAM: Protein of unknown function (DUF1232); COGs: COG3339 conserved hypothetical protein; InterPro IPR010652; KEGG: cyh:Cyan8802_1839 protein of unknown function DUF1232; PFAM: protein of unknown function DUF1232; SPTR: Putative uncharacterized protein.
       0.483
AFZ48555.1
PFAM: NIL domain; InterPro IPR017896:IPR018449:IPR017900; KEGG: ana:all0569 hypothetical protein; PFAM: NIL domain; SPTR: All0569 protein.
       0.408
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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