STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ48587.1PFAM: ABC transporter; COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: cyh:Cyan8802_0745 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related. (239 aa)    
Predicted Functional Partners:
AFZ47666.1
Neutral amino acid ABC transporter membrane protein; PFAM: Branched-chain amino acid transport system / permease component; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: mar:MAE_00300 amino acid transport system permease protein; PFAM: inner-membrane translocator; SPTR: Amino acid transport system permease protein.
 
 0.985
AFZ48461.1
Neutral amino acid-binding protein; PFAM: Receptor family ligand binding region; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: mar:MAE_32490 periplasmic binding protein; PFAM: Extracellular ligand-binding receptor; SPTR: Genome sequencing data, contig C319.
 
 
 0.972
AFZ48582.1
Neutral amino acid ABC transporter membrane protein; PFAM: Branched-chain amino acid transport system / permease component; COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: cyt:cce_2946 branched-chain amino acid ABC transporter permease protein; PFAM: inner-membrane translocator; SPTR: Genome sequencing data, contig C326.
 
 
 0.971
AFZ48366.1
PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter; COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR017871:IPR003439:IPR003593; KEGG: cyt:cce_3417 ATP-binding protein of ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter.
 
 
0.953
AFZ47667.1
Urea ABC transporter membrane protein; PFAM: Branched-chain amino acid transport system / permease component; TIGRFAM: urea ABC transporter, permease protein UrtC; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851:IPR017778; KEGG: mar:MAE_06200 UreA transport system permease protein; PFAM: inner-membrane translocator; SPTR: Urea transport system permease protein; TIGRFAM: urea ABC transporter, permease protein UrtC.
  
 0.871
AFZ46404.1
Urea ABC transporter membrane protein; PFAM: Branched-chain amino acid transport system / permease component; TIGRFAM: urea ABC transporter, permease protein UrtB; COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851:IPR017779; KEGG: cyc:PCC7424_2863 UreA ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; SPTR: Urea ABC transporter, permease protein UrtB; TIGRFAM: urea ABC transporter, permease protein UrtB.
 
  
 0.781
AFZ47213.1
Urea-binding protein; PFAM: Receptor family ligand binding region; TIGRFAM: urea ABC transporter, urea binding protein; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR000709:IPR017777:IPR001828; KEGG: mar:MAE_06220 ABC-type UreA transport system substrate-binding protein; PFAM: Extracellular ligand-binding receptor; SPTR: Similar to P74390_SYNY3 Negative aliphatic amidase regulator; TIGRFAM: urea ABC transporter, urea binding protein.
 
  
 0.534
AFZ47413.1
PFAM: CBS domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG0642 Signal transduction histidine kinase; InterProIPR000644:IPR003018:IPR000014:IPR001610:IPR 003661:IPR003594:IPR001789:IPR004358:IPR013767:IPR016132:I PR005467:IPR000700; KEGG: ava:Ava_1029 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; CBS domain containing protein; PAS fold domain pro [...]
  
  
 0.464
AFZ48588.1
PFAM: Surface antigen variable number repeat; POTRA domain, ShlB-type; Surface antigen; TIGRFAM: chloroplast envelope protein translocase, IAP75 family; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184:IPR008162; KEGG: cyc:PCC7424_2608 surface antigen (D15); PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; SPTR: Surface antigen (D15).
       0.453
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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