STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcyAPhycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family. (250 aa)    
Predicted Functional Partners:
AFY29274.1
PFAM: Heme oxygenase.
 
  
 0.970
cpcS-2
CpeS-like protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
   
 0.824
AFY27682.1
DevC protein; PFAM: Predicted permease; TIGRFAM: DevC protein.
 
     0.806
AFY27839.1
Hypothetical protein.
  
     0.775
AFY30048.1
Hypothetical protein.
  
     0.775
AFY30185.1
PFAM: Domain of unknown function (DUF1825).
  
     0.775
AFY27793.1
PFAM: Protein of unknown function (DUF3110).
  
     0.772
AFY28807.1
PFAM: Protein of unknown function (DUF3529).
  
     0.769
AFY27681.1
TIGRFAM: RND family efflux transporter, MFP subunit; ABC exporter membrane fusion protein, DevB family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.761
AFY30156.1
Allophycocyanin alpha subunit apoprotein; PFAM: Phycobilisome protein.
  
   
 0.760
Your Current Organism:
Cyanobium gracile
NCBI taxonomy Id: 292564
Other names: C. gracile PCC 6307, Coccochloris peniocystis UTCC 70 (no longer available), Coccochloris peniocystis UTCC 71, Cyanobium gracile PCC 6307, Synechococcus sp. ATCC 27147, Synechococcus sp. PCC 6307
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