STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thf1Photosystem II biogenesis protein Psp29; May be involved in photosynthetic membrane biogenesis. (231 aa)    
Predicted Functional Partners:
AFY29256.1
Putative photosystem II stability/assembly factor-like protein; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity.
  
   
 0.835
AFY29020.1
PFAM: Manganese-stabilising protein / photosystem II polypeptide.
  
  
 0.805
psb28
PFAM: Psb28 protein; TIGRFAM: photosystem II reaction center protein Psb28; Belongs to the Psb28 family.
  
   
 0.785
AFY28110.1
PsbP; PFAM: PsbP.
  
   
 0.785
AFY27262.1
PFAM: Protein of unknown function (DUF1092).
  
    0.776
AFY28484.1
Hypothetical protein.
  
     0.775
AFY30086.1
PFAM: Protein of unknown function (DUF3119).
  
     0.775
AFY27839.1
Hypothetical protein.
  
     0.774
AFY27733.1
PFAM: Protein of unknown function (DUF2930).
  
     0.773
AFY30323.1
PFAM: Protein of unknown function (DUF3067).
  
     0.773
Your Current Organism:
Cyanobium gracile
NCBI taxonomy Id: 292564
Other names: C. gracile PCC 6307, Coccochloris peniocystis UTCC 70 (no longer available), Coccochloris peniocystis UTCC 71, Cyanobium gracile PCC 6307, Synechococcus sp. ATCC 27147, Synechococcus sp. PCC 6307
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