STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY27923.1Subtilisin-like serine protease; PFAM: Subtilase family. (783 aa)    
Predicted Functional Partners:
AFY28641.1
Regulatory P domain of subtilisin-like proprotein convertases; PFAM: Proprotein convertase P-domain; Subtilase family; Belongs to the peptidase S8 family.
  
   
 0.649
AFY28989.1
5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase; PFAM: 5'-nucleotidase, C-terminal domain; manually curated.
  
  
 0.647
AFY27922.1
Putative xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase.
 
     0.642
AFY28988.1
PFAM: Alkaline phosphatase; Belongs to the alkaline phosphatase family.
  
  
 0.560
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
 
 0.559
AFY27881.1
Hypothetical protein; Manually curated.
  
 
 0.558
AFY28282.1
PFAM: Calx-beta domain; TIGRFAM: type 1 secretion C-terminal target domain (VC_A0849 subclass).
  
 
 0.558
AFY28326.1
Hypothetical protein.
  
 
 0.558
AFY29905.1
Hypothetical protein.
  
 
 0.558
AFY30357.1
PFAM: Protein of unknown function (DUF3370).
  
 
 0.558
Your Current Organism:
Cyanobium gracile
NCBI taxonomy Id: 292564
Other names: C. gracile PCC 6307, Coccochloris peniocystis UTCC 70 (no longer available), Coccochloris peniocystis UTCC 71, Cyanobium gracile PCC 6307, Synechococcus sp. ATCC 27147, Synechococcus sp. PCC 6307
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