STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY28700.1PFAM: Phycobilisome Linker polypeptide; Belongs to the phycobilisome linker protein family. (254 aa)    
Predicted Functional Partners:
AFY28790.1
Phycocyanin, alpha subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, alpha subunit.
  
 
 0.996
AFY28202.1
Phycocyanin, beta subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, beta subunit.
  
 
 0.994
AFY28212.1
Phycocyanin, alpha subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, alpha subunit.
  
 
 0.994
AFY28213.1
Phycocyanin, beta subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, beta subunit.
  
 
 0.994
AFY28789.1
Phycocyanin, beta subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, beta subunit.
  
 
 0.994
AFY28788.1
PFAM: CpcD/allophycocyanin linker domain.
    
 0.986
AFY28791.1
HEAT repeat-containing protein; PFAM: PBS lyase HEAT-like repeat.
 
 
 0.980
AFY28792.1
PFAM: PBS lyase HEAT-like repeat.
  
 
 0.980
AFY27668.1
PFAM: Phycobilisome protein; TIGRFAM: allophycocyanin, beta subunit.
  
 
 
 0.972
AFY27744.1
Allophycocyanin alpha-B subunit apoprotein; PFAM: Phycobilisome protein.
  
 
 
 0.972
Your Current Organism:
Cyanobium gracile
NCBI taxonomy Id: 292564
Other names: C. gracile PCC 6307, Coccochloris peniocystis UTCC 70 (no longer available), Coccochloris peniocystis UTCC 71, Cyanobium gracile PCC 6307, Synechococcus sp. ATCC 27147, Synechococcus sp. PCC 6307
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