STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY28789.1Phycocyanin, beta subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, beta subunit. (172 aa)    
Predicted Functional Partners:
AFY28790.1
Phycocyanin, alpha subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, alpha subunit.
 
 
0.998
AFY28700.1
PFAM: Phycobilisome Linker polypeptide; Belongs to the phycobilisome linker protein family.
  
 
 0.994
AFY28791.1
HEAT repeat-containing protein; PFAM: PBS lyase HEAT-like repeat.
 
  
 0.990
AFY28792.1
PFAM: PBS lyase HEAT-like repeat.
 
  
 0.990
AFY28030.1
PFAM: Phycobilisome Linker polypeptide; Belongs to the phycobilisome linker protein family.
  
 
 0.989
AFY28788.1
PFAM: CpcD/allophycocyanin linker domain.
   
 0.982
AFY28212.1
Phycocyanin, alpha subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, alpha subunit.
 
 
0.972
AFY28828.1
PFAM: CpcD/allophycocyanin linker domain; Phycobilisome Linker polypeptide; Belongs to the phycobilisome linker protein family.
 
 
 
 0.945
AFY28787.1
PFAM: CpcD/allophycocyanin linker domain; Phycobilisome Linker polypeptide; Belongs to the phycobilisome linker protein family.
 
 
 
 0.940
AFY30157.1
PFAM: Phycobilisome protein; Phycobilisome Linker polypeptide; Belongs to the phycobilisome linker protein family.
  
 
 
 0.931
Your Current Organism:
Cyanobium gracile
NCBI taxonomy Id: 292564
Other names: C. gracile PCC 6307, Coccochloris peniocystis UTCC 70 (no longer available), Coccochloris peniocystis UTCC 71, Cyanobium gracile PCC 6307, Synechococcus sp. ATCC 27147, Synechococcus sp. PCC 6307
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