Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY27354.1 | AFY28827.1 | Cyagr_0141 | Cyagr_1678 | Hypothetical protein. | PFAM: Thi4 family; TIGRFAM: C-3',4' desaturase CrtD. | 0.633 |
AFY27354.1 | AFY30360.1 | Cyagr_0141 | Cyagr_3286 | Hypothetical protein. | PFAM: Cytochrome c. | 0.775 |
AFY27354.1 | ndhO | Cyagr_0141 | Cyagr_2936 | Hypothetical protein. | Cyanobacterial and plant NDH-1 subunit O; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. | 0.775 |
AFY27354.1 | secE | Cyagr_0141 | Cyagr_2751 | Hypothetical protein. | Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.775 |
AFY27358.1 | AFY28827.1 | Cyagr_0147 | Cyagr_1678 | Hypothetical protein; Manually curated. | PFAM: Thi4 family; TIGRFAM: C-3',4' desaturase CrtD. | 0.636 |
AFY27358.1 | AFY30360.1 | Cyagr_0147 | Cyagr_3286 | Hypothetical protein; Manually curated. | PFAM: Cytochrome c. | 0.775 |
AFY27358.1 | ndhO | Cyagr_0147 | Cyagr_2936 | Hypothetical protein; Manually curated. | Cyanobacterial and plant NDH-1 subunit O; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. | 0.775 |
AFY27358.1 | secE | Cyagr_0147 | Cyagr_2751 | Hypothetical protein; Manually curated. | Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.775 |
AFY28827.1 | AFY27354.1 | Cyagr_1678 | Cyagr_0141 | PFAM: Thi4 family; TIGRFAM: C-3',4' desaturase CrtD. | Hypothetical protein. | 0.633 |
AFY28827.1 | AFY27358.1 | Cyagr_1678 | Cyagr_0147 | PFAM: Thi4 family; TIGRFAM: C-3',4' desaturase CrtD. | Hypothetical protein; Manually curated. | 0.636 |
AFY28827.1 | AFY29757.1 | Cyagr_1678 | Cyagr_2664 | PFAM: Thi4 family; TIGRFAM: C-3',4' desaturase CrtD. | Hypothetical protein. | 0.607 |
AFY28827.1 | AFY29983.1 | Cyagr_1678 | Cyagr_2891 | PFAM: Thi4 family; TIGRFAM: C-3',4' desaturase CrtD. | Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase. | 0.883 |
AFY28827.1 | AFY30096.1 | Cyagr_1678 | Cyagr_3013 | PFAM: Thi4 family; TIGRFAM: C-3',4' desaturase CrtD. | Hypothetical protein. | 0.618 |
AFY28827.1 | AFY30289.1 | Cyagr_1678 | Cyagr_3210 | PFAM: Thi4 family; TIGRFAM: C-3',4' desaturase CrtD. | Hypothetical protein. | 0.608 |
AFY28827.1 | AFY30360.1 | Cyagr_1678 | Cyagr_3286 | PFAM: Thi4 family; TIGRFAM: C-3',4' desaturase CrtD. | PFAM: Cytochrome c. | 0.649 |
AFY28827.1 | AFY30411.1 | Cyagr_1678 | Cyagr_3341 | PFAM: Thi4 family; TIGRFAM: C-3',4' desaturase CrtD. | Hypothetical protein. | 0.623 |
AFY28827.1 | ndhO | Cyagr_1678 | Cyagr_2936 | PFAM: Thi4 family; TIGRFAM: C-3',4' desaturase CrtD. | Cyanobacterial and plant NDH-1 subunit O; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. | 0.634 |
AFY28827.1 | secE | Cyagr_1678 | Cyagr_2751 | PFAM: Thi4 family; TIGRFAM: C-3',4' desaturase CrtD. | Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.636 |
AFY29757.1 | AFY28827.1 | Cyagr_2664 | Cyagr_1678 | Hypothetical protein. | PFAM: Thi4 family; TIGRFAM: C-3',4' desaturase CrtD. | 0.607 |
AFY29757.1 | AFY30360.1 | Cyagr_2664 | Cyagr_3286 | Hypothetical protein. | PFAM: Cytochrome c. | 0.775 |
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