STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY28946.1Hypothetical protein; PFAM: ATPase family associated with various cellular activities (AAA); R3H domain; manually curated. (534 aa)    
Predicted Functional Partners:
AFY28947.1
Fe-S-cluster-containing hydrogenase subunit; PFAM: Iron-Sulfur binding protein C terminal.
       0.610
AFY28690.1
Hypothetical protein; PFAM: L,D-transpeptidase catalytic domain.
  
     0.471
AFY28945.1
Putative phosphatase.
       0.434
ndhN
NADH-quinone oxidoreductase cyanobacterial subunit N; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
       0.410
AFY29086.1
PFAM: O-Antigen ligase; TIGRFAM: putative bicarbonate transporter, IctB family.
  
     0.407
AFY30337.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
  
     0.407
AFY28472.1
Sugar phosphate permease; PFAM: Bacterial protein of unknown function (DUF894).
  
     0.405
AFY30338.1
Putative secreted hydrolase; PFAM: Hydroxyneurosporene synthase (CrtC).
  
     0.405
AFY28948.1
NhaP-type Na+(K+)/H+ antiporter.
       0.400
Your Current Organism:
Cyanobium gracile
NCBI taxonomy Id: 292564
Other names: C. gracile PCC 6307, Coccochloris peniocystis UTCC 70 (no longer available), Coccochloris peniocystis UTCC 71, Cyanobium gracile PCC 6307, Synechococcus sp. ATCC 27147, Synechococcus sp. PCC 6307
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