STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY29145.1Growth inhibitor; Toxic component of a type II toxin-antitoxin (TA) system. (113 aa)    
Predicted Functional Partners:
AFY29146.1
Hypothetical protein; Manually curated.
 
 
 0.978
AFY29147.1
PFAM: CAAX amino terminal protease family.
       0.773
AFY28886.1
Growth inhibitor; PFAM: PemK-like protein.
  
     0.620
psbB
Photosystem II chlorophyll-binding protein CP47; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light- induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation; Belongs to the PsbB/PsbC family. PsbB subfamily.
    
   0.575
AFY28602.1
Growth regulator; PFAM: SpoVT / AbrB like domain.
  
 
 0.562
AFY28887.1
Growth regulator; PFAM: SpoVT / AbrB like domain.
  
 
 0.562
AFY29148.1
Hypothetical protein.
       0.538
AFY28188.1
Putative transcriptional regulator; PFAM: HxlR-like helix-turn-helix.
   
    0.418
AFY29347.1
Putative transcriptional regulator; PFAM: HxlR-like helix-turn-helix.
   
    0.418
pyrE-2
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
     
 0.402
Your Current Organism:
Cyanobium gracile
NCBI taxonomy Id: 292564
Other names: C. gracile PCC 6307, Coccochloris peniocystis UTCC 70 (no longer available), Coccochloris peniocystis UTCC 71, Cyanobium gracile PCC 6307, Synechococcus sp. ATCC 27147, Synechococcus sp. PCC 6307
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