STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY29644.1PFAM: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family. (385 aa)    
Predicted Functional Partners:
AFY29643.1
Urea ABC transporter, permease protein UrtC; PFAM: Branched-chain amino acid transport system / permease component; TIGRFAM: urea ABC transporter, permease protein UrtC; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
AFY29645.1
TIGRFAM: urea ABC transporter, urea binding protein.
 
 
 0.992
AFY29642.1
Urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter; TIGRFAM: urea ABC transporter, ATP-binding protein UrtD.
 
 0.984
AFY29641.1
PFAM: ABC transporter; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE.
 
 
 0.983
AFY28266.1
PFAM: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
  
 0.933
AFY28267.1
PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter.
  
 0.925
AFY28264.1
ABC-type branched-chain amino acid transport system, periplasmic component; PFAM: Receptor family ligand binding region.
 
  
 0.832
AFY28268.1
ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter.
 
  
 0.803
ureE
Urease accessory protein UreE; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
 
   
 0.526
ureD
Urease accessory protein UreH; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.467
Your Current Organism:
Cyanobium gracile
NCBI taxonomy Id: 292564
Other names: C. gracile PCC 6307, Coccochloris peniocystis UTCC 70 (no longer available), Coccochloris peniocystis UTCC 71, Cyanobium gracile PCC 6307, Synechococcus sp. ATCC 27147, Synechococcus sp. PCC 6307
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