STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY29819.1Hemolysin activation/secretion protein. (575 aa)    
Predicted Functional Partners:
AFY29820.1
Hypothetical protein.
 
     0.731
AFY30379.1
Putative integral membrane protein; PFAM: Uncharacterised protein family (UPF0104).
  
     0.630
AFY28296.1
Hypothetical protein.
  
     0.611
AFY27787.1
Hypothetical protein.
  
  
 0.562
AFY28461.1
Hypothetical protein.
  
     0.555
AFY30227.1
PFAM: Ferredoxin thioredoxin reductase variable alpha chain.
  
     0.554
AFY29144.1
PFAM: Cellulose binding domain; Glycosyl hydrolase family 9.
  
 
 0.546
AFY28319.1
Parvulin-like peptidyl-prolyl isomerase; PFAM: PPIC-type PPIASE domain.
  
  
 0.535
AFY27755.1
Hypothetical protein.
  
     0.516
AFY28109.1
glycine/D-amino acid oxidase, deaminating; PFAM: FAD dependent oxidoreductase.
  
     0.506
Your Current Organism:
Cyanobium gracile
NCBI taxonomy Id: 292564
Other names: C. gracile PCC 6307, Coccochloris peniocystis UTCC 70 (no longer available), Coccochloris peniocystis UTCC 71, Cyanobium gracile PCC 6307, Synechococcus sp. ATCC 27147, Synechococcus sp. PCC 6307
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.