STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY29983.1Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase. (309 aa)    
Predicted Functional Partners:
AFY29982.1
Phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase.
  
 0.996
AFY27511.1
Geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
 0.954
AFY27319.1
Phytoene dehydrogenase-like oxidoreductase; PFAM: FAD binding domain; FAD dependent oxidoreductase; manually curated.
 
  
 0.933
AFY28076.1
Carotene isomerase; PFAM: FAD dependent oxidoreductase; TIGRFAM: carotene isomerase.
  
 0.910
AFY29914.1
Geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.906
AFY27608.1
PFAM: Polyprenyl synthetase; TIGRFAM: solanesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.903
AFY27698.1
Geranylgeranyl reductase; PFAM: FAD binding domain; TIGRFAM: geranylgeranyl reductase; geranylgeranyl reductase family.
 
 
 0.892
AFY30033.1
Carotene 7,8-desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
   
 0.886
AFY28827.1
PFAM: Thi4 family; TIGRFAM: C-3',4' desaturase CrtD.
 
  
 0.883
AFY29798.1
Sterol desaturase; PFAM: Fatty acid hydroxylase superfamily.
  
 
 0.849
Your Current Organism:
Cyanobium gracile
NCBI taxonomy Id: 292564
Other names: C. gracile PCC 6307, Coccochloris peniocystis UTCC 70 (no longer available), Coccochloris peniocystis UTCC 71, Cyanobium gracile PCC 6307, Synechococcus sp. ATCC 27147, Synechococcus sp. PCC 6307
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