Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFY30288.1Hypothetical protein. (226 aa)    
Predicted Functional Partners:
AFY28279.1
Hypothetical protein.
  
     0.765
AFY30287.1
PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit.
       0.757
AFY28099.1
Putative membrane protein; PFAM: MgtC family.
 
  
 0.618
AFY29699.1
Putative membrane protein; PFAM: MgtC family; manually curated.
  
  
 0.569
AFY29720.1
Hypothetical protein.
  
     0.550
AFY30285.1
PFAM: Aldo/keto reductase family; manually curated.
       0.544
AFY30286.1
Hypothetical protein; PFAM: Uncharacterised ACR, COG1259.
       0.544
AFY29747.1
Thiosulfate reductase cytochrome B subunit (membrane anchoring protein); PFAM: Cytochrome b(N-terminal)/b6/petB.
  
     0.537
AFY29722.1
Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily.
  
     0.480
AFY27991.1
Tryptophan-rich sensory protein; PFAM: TspO/MBR family.
 
     0.435
Your Current Organism:
Cyanobium gracile
NCBI taxonomy Id: 292564
Other names: C. gracile PCC 6307, Coccochloris peniocystis UTCC 70 (no longer available), Coccochloris peniocystis UTCC 71, Cyanobium gracile PCC 6307, Synechococcus sp. ATCC 27147, Synechococcus sp. PCC 6307
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