STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY30333.1TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (352 aa)    
Predicted Functional Partners:
AFY27822.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
 
 
 0.866
AFY29151.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
 
 
 0.852
macB
ABC-type antimicrobial peptide transport system, ATPase component; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.791
AFY28720.1
Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.786
AFY30481.1
Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.782
AFY28717.1
Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.779
AFY29152.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
 
 
 0.743
AFY28721.1
TIGRFAM: RND family efflux transporter, MFP subunit; manually curated; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.742
AFY27681.1
TIGRFAM: RND family efflux transporter, MFP subunit; ABC exporter membrane fusion protein, DevB family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.731
AFY30433.1
PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.712
Your Current Organism:
Cyanobium gracile
NCBI taxonomy Id: 292564
Other names: C. gracile PCC 6307, Coccochloris peniocystis UTCC 70 (no longer available), Coccochloris peniocystis UTCC 71, Cyanobium gracile PCC 6307, Synechococcus sp. ATCC 27147, Synechococcus sp. PCC 6307
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