ALC11341.1 protein (Sphingopyxis sp. 113P3) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ALC11341.1

Hypothetical protein; Identified by MetaGeneAnnotator. (159 aa)

Predicted Functional Partners:

ALC11344.1

0.550

ALC13045.1

0.521

ALC11342.1

0.489

ALC11343.1

0.480

ALC13044.1

0.452

ALC11340.1

0.411

Your Current Organism:

Sphingopyxis sp. 113P3

NCBI taxonomy Id: 292913
Other names: S. sp. 113P3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC11340.1	ALC11341.1	LH20_05175	LH20_05180	Paired box protein 6; Product name was assigned by KAAS; K08031.	Hypothetical protein; Identified by MetaGeneAnnotator.	0.411
ALC11340.1	ALC11344.1	LH20_05175	LH20_05195	Paired box protein 6; Product name was assigned by KAAS; K08031.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553
ALC11341.1	ALC11340.1	LH20_05180	LH20_05175	Hypothetical protein; Identified by MetaGeneAnnotator.	Paired box protein 6; Product name was assigned by KAAS; K08031.	0.411
ALC11341.1	ALC11342.1	LH20_05180	LH20_05185	Hypothetical protein; Identified by MetaGeneAnnotator.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
ALC11341.1	ALC11343.1	LH20_05180	LH20_05190	Hypothetical protein; Identified by MetaGeneAnnotator.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
ALC11341.1	ALC11344.1	LH20_05180	LH20_05195	Hypothetical protein; Identified by MetaGeneAnnotator.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
ALC11341.1	ALC13044.1	LH20_05180	LH20_13890	Hypothetical protein; Identified by MetaGeneAnnotator.	Glycerol-3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GPAT/DAPAT family.	0.452
ALC11341.1	ALC13045.1	LH20_05180	LH20_13895	Hypothetical protein; Identified by MetaGeneAnnotator.	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.	0.521
ALC11342.1	ALC11341.1	LH20_05185	LH20_05180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Identified by MetaGeneAnnotator.	0.489
ALC11342.1	ALC11343.1	LH20_05185	LH20_05190	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
ALC11342.1	ALC11344.1	LH20_05185	LH20_05195	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757
ALC11343.1	ALC11341.1	LH20_05190	LH20_05180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Identified by MetaGeneAnnotator.	0.480
ALC11343.1	ALC11342.1	LH20_05190	LH20_05185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
ALC11343.1	ALC11344.1	LH20_05190	LH20_05195	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ALC11344.1	ALC11340.1	LH20_05195	LH20_05175	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Paired box protein 6; Product name was assigned by KAAS; K08031.	0.553
ALC11344.1	ALC11341.1	LH20_05195	LH20_05180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Identified by MetaGeneAnnotator.	0.550
ALC11344.1	ALC11342.1	LH20_05195	LH20_05185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757
ALC11344.1	ALC11343.1	LH20_05195	LH20_05190	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ALC13044.1	ALC11341.1	LH20_13890	LH20_05180	Glycerol-3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GPAT/DAPAT family.	Hypothetical protein; Identified by MetaGeneAnnotator.	0.452
ALC13044.1	ALC13045.1	LH20_13890	LH20_13895	Glycerol-3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GPAT/DAPAT family.	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.	0.951