STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC11514.1Conjugal transfer protein TraA; MobA/MobL family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (991 aa)    
Predicted Functional Partners:
ALC11513.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.863
ALC12138.1
AlpA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.737
ALC10643.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.632
ALC11374.1
ATP-dependent endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.
  
 
 0.621
ALC13541.1
UvrD/REP helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.
  
 
 0.621
polA
DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.545
ALC11515.1
Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.518
ALC11516.1
Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.518
ALC11512.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.495
ALC14176.1
Hypothetical protein; Identified by MetaGeneAnnotator; K06400.
 
   
 0.487
Your Current Organism:
Sphingopyxis sp. 113P3
NCBI taxonomy Id: 292913
Other names: S. sp. 113P3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.