STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC11618.1Structural toxin protein RtxA; Identified by MetaGeneAnnotator. (851 aa)    
Predicted Functional Partners:
ALC11620.1
Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.814
ALC11619.1
Peptidoglycan-associated lipoprotein; Product name was assigned by KAAS; K03640.
  
 
 0.809
ALC11788.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.783
ALC13675.1
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.783
ALC10658.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.777
ALC13699.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.777
ALC11623.1
Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.748
ALC11621.1
ATP-binding cassette, subfamily B, bacterial; Product name was assigned by KAAS; K06147.
 
  
 0.728
ALC11622.1
N-acetylmuramoyl-L-alanine amidase; Product name was assigned by KAAS; K01449.
  
    0.595
ALC10920.1
Putative chloride peroxidase; Identified by MetaGeneAnnotator.
 
 
 0.570
Your Current Organism:
Sphingopyxis sp. 113P3
NCBI taxonomy Id: 292913
Other names: S. sp. 113P3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.