ALC13109.1 protein (Sphingopyxis sp. 113P3) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ALC13109.1

Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)

Predicted Functional Partners:

ALC13107.1

0.493

ALC13106.1

0.487

ALC13110.1

0.463

ALC13116.1

0.451

ALC13108.1

0.444

ALC14527.1

0.409

Your Current Organism:

Sphingopyxis sp. 113P3

NCBI taxonomy Id: 292913
Other names: S. sp. 113P3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC13106.1	ALC13107.1	LH20_14205	LH20_14210	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
ALC13106.1	ALC13108.1	LH20_14205	LH20_14215	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinate-semialdehyde dehydrogenase (NADP+); Product name was assigned by KAAS; K00135.	0.783
ALC13106.1	ALC13109.1	LH20_14205	LH20_14220	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.487
ALC13107.1	ALC13106.1	LH20_14210	LH20_14205	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
ALC13107.1	ALC13108.1	LH20_14210	LH20_14215	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinate-semialdehyde dehydrogenase (NADP+); Product name was assigned by KAAS; K00135.	0.773
ALC13107.1	ALC13109.1	LH20_14210	LH20_14220	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
ALC13108.1	ALC13106.1	LH20_14215	LH20_14205	Succinate-semialdehyde dehydrogenase (NADP+); Product name was assigned by KAAS; K00135.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
ALC13108.1	ALC13107.1	LH20_14215	LH20_14210	Succinate-semialdehyde dehydrogenase (NADP+); Product name was assigned by KAAS; K00135.	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ALC13108.1	ALC13109.1	LH20_14215	LH20_14220	Succinate-semialdehyde dehydrogenase (NADP+); Product name was assigned by KAAS; K00135.	Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
ALC13109.1	ALC13106.1	LH20_14220	LH20_14205	Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.487
ALC13109.1	ALC13107.1	LH20_14220	LH20_14210	Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
ALC13109.1	ALC13108.1	LH20_14220	LH20_14215	Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinate-semialdehyde dehydrogenase (NADP+); Product name was assigned by KAAS; K00135.	0.444
ALC13109.1	ALC13110.1	LH20_14220	LH20_14225	Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
ALC13109.1	ALC13116.1	LH20_14220	LH20_14255	Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451
ALC13109.1	ALC14527.1	LH20_14220	LH20_21410	Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
ALC13110.1	ALC13109.1	LH20_14225	LH20_14220	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
ALC13110.1	ALC14527.1	LH20_14225	LH20_21410	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.599
ALC13116.1	ALC13109.1	LH20_14255	LH20_14220	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451
ALC13116.1	ALC14527.1	LH20_14255	LH20_21410	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
ALC14527.1	ALC13109.1	LH20_21410	LH20_14220	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409