ALC13588.1 protein (Sphingopyxis sp. 113P3) - STRING interaction network

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[Homology]

Score

ALC13588.1

RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)

Predicted Functional Partners:

rplS

0.890

ALC13587.1

0.881

ALC12387.1

0.877

rpmB

0.849

rplQ

0.848

rpmJ

0.839

rpmH

0.837

rpmA

0.835

rplT

0.833

rplB

0.831

Your Current Organism:

Sphingopyxis sp. 113P3

NCBI taxonomy Id: 292913
Other names: S. sp. 113P3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC12387.1	ALC13588.1	LH20_10530	LH20_16640	Molecular chaperone Hsp33; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
ALC13587.1	ALC13588.1	LH20_16635	LH20_16640	Helicase-like protein; Identified by MetaGeneAnnotator; K17675.	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.881
ALC13588.1	ALC12387.1	LH20_16640	LH20_10530	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molecular chaperone Hsp33; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.	0.877
ALC13588.1	ALC13587.1	LH20_16640	LH20_16635	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase-like protein; Identified by MetaGeneAnnotator; K17675.	0.881
ALC13588.1	rplB	LH20_16640	LH20_21105	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.831
ALC13588.1	rplQ	LH20_16640	LH20_15300	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
ALC13588.1	rplS	LH20_16640	LH20_16545	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.890
ALC13588.1	rplT	LH20_16640	LH20_21455	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.833
ALC13588.1	rpmA	LH20_16640	LH20_16770	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL27 family.	0.835
ALC13588.1	rpmB	LH20_16640	LH20_18050	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family.	0.849
ALC13588.1	rpmH	LH20_16640	LH20_00080	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L34; In Escherichia coli transcription of this gene is enhanced by polyamines; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL34 family.	0.837
ALC13588.1	rpmJ	LH20_16640	LH20_21310	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L36; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL36 family.	0.839
rplB	ALC13588.1	LH20_21105	LH20_16640	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.831
rplB	rplQ	LH20_21105	LH20_15300	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
rplB	rplS	LH20_21105	LH20_16545	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.992
rplB	rplT	LH20_21105	LH20_21455	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.993
rplB	rpmA	LH20_21105	LH20_16770	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL27 family.	0.986
rplB	rpmB	LH20_21105	LH20_18050	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family.	0.981
rplB	rpmH	LH20_21105	LH20_00080	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	50S ribosomal protein L34; In Escherichia coli transcription of this gene is enhanced by polyamines; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL34 family.	0.884
rplB	rpmJ	LH20_21105	LH20_21310	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	50S ribosomal protein L36; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL36 family.	0.988