STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC13651.1NADH dehydrogenase; Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)    
Predicted Functional Partners:
ALC11825.1
ETC complex subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.802
ALC10603.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.742
ALC13652.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.735
ALC13653.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.679
ALC11041.1
Methyltransferase type 12; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.590
atpE
ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
     0.553
ALC11980.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0262 family.
  
   
 0.527
ALC10635.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.523
ALC10634.1
Cytochrome c, class I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.514
recO
DNA recombination protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.509
Your Current Organism:
Sphingopyxis sp. 113P3
NCBI taxonomy Id: 292913
Other names: S. sp. 113P3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.