Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CD943_00825 | CD943_00830 | GCA_000988015_01232 | GCA_000988015_01233 | Unannotated protein. | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. | 0.709 |
CD943_00825 | CD943_00840 | GCA_000988015_01232 | GCA_000988015_01235 | Unannotated protein. | Unannotated protein. | 0.463 |
CD943_00825 | tadA | GCA_000988015_01232 | GCA_000988015_01234 | Unannotated protein. | Unannotated protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.529 |
CD943_00830 | CD943_00825 | GCA_000988015_01233 | GCA_000988015_01232 | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. | Unannotated protein. | 0.709 |
CD943_00830 | CD943_00840 | GCA_000988015_01233 | GCA_000988015_01235 | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. | Unannotated protein. | 0.500 |
CD943_00830 | cmk | GCA_000988015_01233 | GCA_000988015_02002 | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. | Unannotated protein. | 0.704 |
CD943_00830 | der | GCA_000988015_01233 | GCA_000988015_01418 | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. | Unannotated protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.852 |
CD943_00830 | rluC_1 | GCA_000988015_01233 | GCA_000988015_00938 | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.478 |
CD943_00830 | rsmD | GCA_000988015_01233 | GCA_000988015_01230 | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. | Unannotated protein. | 0.588 |
CD943_00830 | scpB | GCA_000988015_01233 | GCA_000988015_00236 | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. | Unannotated protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.551 |
CD943_00830 | tadA | GCA_000988015_01233 | GCA_000988015_01234 | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. | Unannotated protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.598 |
CD943_00830 | xth | GCA_000988015_01233 | GCA_000988015_01797 | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. | Unannotated protein. | 0.554 |
CD943_00830 | xthA_2 | GCA_000988015_01233 | GCA_000988015_02688 | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. | Unannotated protein. | 0.554 |
CD943_00840 | CD943_00825 | GCA_000988015_01235 | GCA_000988015_01232 | Unannotated protein. | Unannotated protein. | 0.463 |
CD943_00840 | CD943_00830 | GCA_000988015_01235 | GCA_000988015_01233 | Unannotated protein. | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. | 0.500 |
CD943_00840 | tadA | GCA_000988015_01235 | GCA_000988015_01234 | Unannotated protein. | Unannotated protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.674 |
cmk | CD943_00830 | GCA_000988015_02002 | GCA_000988015_01233 | Unannotated protein. | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. | 0.704 |
cmk | der | GCA_000988015_02002 | GCA_000988015_01418 | Unannotated protein. | Unannotated protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.984 |
cmk | scpB | GCA_000988015_02002 | GCA_000988015_00236 | Unannotated protein. | Unannotated protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.784 |
der | CD943_00830 | GCA_000988015_01418 | GCA_000988015_01233 | Unannotated protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. | 0.852 |
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