Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CD943_06500 | CD943_08260 | GCA_000988015_02232 | GCA_000988015_02615 | Unannotated protein; Belongs to the TPP enzyme family. | Unannotated protein. | 0.920 |
CD943_06500 | CD943_09105 | GCA_000988015_02232 | GCA_000988015_02756 | Unannotated protein; Belongs to the TPP enzyme family. | Unannotated protein. | 0.929 |
CD943_06500 | CD943_09595 | GCA_000988015_02232 | GCA_000988015_03110 | Unannotated protein; Belongs to the TPP enzyme family. | Unannotated protein; Belongs to the alpha-IPM synthase/homocitrate synthase family. | 0.913 |
CD943_06500 | CD943_09600 | GCA_000988015_02232 | GCA_000988015_03111 | Unannotated protein; Belongs to the TPP enzyme family. | Unannotated protein. | 0.931 |
CD943_06500 | CD943_09605 | GCA_000988015_02232 | GCA_000988015_03112 | Unannotated protein; Belongs to the TPP enzyme family. | Unannotated protein. | 0.923 |
CD943_06500 | CD943_10490 | GCA_000988015_02232 | GCA_000988015_01553 | Unannotated protein; Belongs to the TPP enzyme family. | Unannotated protein. | 0.951 |
CD943_06500 | ilvA | GCA_000988015_02232 | GCA_000988015_02095 | Unannotated protein; Belongs to the TPP enzyme family. | Unannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.929 |
CD943_06500 | ilvC | GCA_000988015_02232 | GCA_000988015_03113 | Unannotated protein; Belongs to the TPP enzyme family. | Unannotated protein; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.989 |
CD943_06500 | leuB | GCA_000988015_02232 | GCA_000988015_01863 | Unannotated protein; Belongs to the TPP enzyme family. | Unannotated protein; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. | 0.945 |
CD943_06500 | leuB-2 | GCA_000988015_02232 | GCA_000988015_03106 | Unannotated protein; Belongs to the TPP enzyme family. | Unannotated protein; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. | 0.948 |
CD943_08260 | CD943_06500 | GCA_000988015_02615 | GCA_000988015_02232 | Unannotated protein. | Unannotated protein; Belongs to the TPP enzyme family. | 0.920 |
CD943_08260 | CD943_09105 | GCA_000988015_02615 | GCA_000988015_02756 | Unannotated protein. | Unannotated protein. | 0.462 |
CD943_08260 | CD943_09595 | GCA_000988015_02615 | GCA_000988015_03110 | Unannotated protein. | Unannotated protein; Belongs to the alpha-IPM synthase/homocitrate synthase family. | 0.879 |
CD943_08260 | CD943_09600 | GCA_000988015_02615 | GCA_000988015_03111 | Unannotated protein. | Unannotated protein. | 0.800 |
CD943_08260 | CD943_09605 | GCA_000988015_02615 | GCA_000988015_03112 | Unannotated protein. | Unannotated protein. | 0.920 |
CD943_08260 | CD943_10490 | GCA_000988015_02615 | GCA_000988015_01553 | Unannotated protein. | Unannotated protein. | 0.616 |
CD943_08260 | ilvA | GCA_000988015_02615 | GCA_000988015_02095 | Unannotated protein. | Unannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.462 |
CD943_08260 | ilvC | GCA_000988015_02615 | GCA_000988015_03113 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.508 |
CD943_08260 | leuB | GCA_000988015_02615 | GCA_000988015_01863 | Unannotated protein. | Unannotated protein; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. | 0.451 |
CD943_08260 | leuB-2 | GCA_000988015_02615 | GCA_000988015_03106 | Unannotated protein. | Unannotated protein; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. | 0.451 |
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