STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODR13290.1Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (288 aa)    
Predicted Functional Partners:
ODR15016.1
3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.944
ODR09947.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.795
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
  
  
 0.782
ODR13288.1
Arsenate reductase (glutaredoxin); Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family.
       0.776
lpqT
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.776
ODR15194.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.697
ODR12979.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.697
ODR12980.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.697
ODR12981.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.697
ODR15097.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.680
Your Current Organism:
Mycobacterium shimoidei
NCBI taxonomy Id: 29313
Other names: ATCC 27962, CCUG 37517, DSM 44152, JCM 12376, M. shimoidei, strain E4796
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.