STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODR03904.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)    
Predicted Functional Partners:
ODR03905.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.954
BHQ16_22380
Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.599
ODR04546.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.529
BHQ16_04940
Hypothetical protein; Frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.441
ODR15549.1
Ferredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.410
ODR14653.1
3-ketosteroid-9-alpha-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.410
ODR14042.1
Sulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.410
ODR13683.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.410
ODR12907.1
stearoyl-CoA 9-desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.410
ODR06369.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.410
Your Current Organism:
Mycobacterium shimoidei
NCBI taxonomy Id: 29313
Other names: ATCC 27962, CCUG 37517, DSM 44152, JCM 12376, M. shimoidei, strain E4796
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.