Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
ORV70860.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)    
Predicted Functional Partners:
ORV70835.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.987
ORV70861.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
0.903
ORV69343.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.864
ORV71940.1
Virulence factor Mce; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.855
ORV67871.1
Virulence factor Mce; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.854
AWC09_12970
Hypothetical protein; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.847
ORV68223.1
Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.826
ORV69531.1
Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.825
ORV69341.1
Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.825
ORV71942.1
Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.824
Your Current Organism:
Mycolicibacter hiberniae
NCBI taxonomy Id: 29314
Other names: ATCC 49874, ATCC 9874, CIP 104537, DSM 44241, JCM 13571, M. hiberniae, Mycobacterium hiberniae, Mycobacterium hiberniense, strain Hi 11
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