Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT86340.1Fibronectin. (2031 aa)    
Predicted Functional Partners:
GAT86337.1
Transglutaminase.
 
     0.872
GAT86338.1
Hypothetical protein.
 
     0.872
GAT86334.1
Hypothetical protein.
 
     0.869
GAT86331.1
Cell division protein FtsK.
 
 
 
 0.868
GAT86336.1
Hypothetical protein.
 
     0.866
GAT86332.1
Hypothetical protein.
 
     0.840
GAT86333.1
Hypothetical protein.
 
  
 0.838
GAT86339.1
ATPase AAA.
 
     0.676
GAT88116.1
Peptidase S41; Degrades oligopeptides; Belongs to the peptidase S41B family.
   
  0.633
GAT86341.1
Hypothetical protein.
       0.572
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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