Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
GAT86626.1Short-chain dehydrogenase. (254 aa)    
Predicted Functional Partners:
GAT89381.1
O-methyltransferase.
 
  
  0.895
GAT86630.1
Xylose isomerase.
 
     0.861
GAT86627.1
3-hydroxyacyl-CoA dehydrogenase.
 
  0.851
GAT86629.1
Dihydroxyacetone kinase.
   
  0.805
GAT86628.1
Ribose 5-phosphate isomerase.
    
  0.778
GAT86625.1
Hypothetical protein.
       0.773
GAT88765.1
Glycosyl transferase.
    
  0.737
GAT87550.1
Hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.734
GAT89712.1
Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.690
GAT88162.1
3-hydroxyacyl-CoA dehydrogenase.
   
 0.672
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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