Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT85480.1Hypothetical protein. (480 aa)    
Predicted Functional Partners:
GAT85479.1
Hypothetical protein.
  
  0.971
GAT88084.1
Hypothetical protein.
 
   
  0.915
GAT85482.1
Hypothetical protein.
 
 
0.843
glgB
Glycogen-branching protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.794
GAT85481.1
Hypothetical protein.
   
   0.788
GAT85965.1
ATP-dependent DNA helicase.
    
   0.662
GAT86804.1
Hypothetical protein.
 
 0.640
GAT86805.1
Hypothetical protein.
 
 0.626
GAT85805.1
Malto-oligosyltrehalose trehalohydrolase.
   
 0.608
GAT85483.1
Hypothetical protein.
  
 
  0.602
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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