STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT86747.1Dioxygenase. (118 aa)    
Predicted Functional Partners:
GAT86360.1
Ferredoxin.
  
 0.977
GAT86389.1
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
  
 0.973
GAT86369.1
Nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 0.971
GAT88205.1
Glutamate synthase.
  
 
 0.922
GAT89428.1
Flavoprotein.
  
 0.909
GAT89447.1
Ferredoxin.
  
 0.902
GAT86358.1
Nitrate transporter.
  
 
 0.856
GAT89223.1
(Fe-S)-binding protein.
    
 0.854
GAT88636.1
Glutamine synthetase.
     
 0.827
GAT88641.1
Glutamine synthetase.
     
 0.827
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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