Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
GAT85492.1phenylacetate-CoA oxygenase subunit PaaJ. (196 aa)    
Predicted Functional Partners:
GAT85489.1
phenylacetate-CoA oxygenase subunit PaaA.
 
 
 0.999
GAT85490.1
phenylacetate-CoA oxygenase.
 
 0.999
GAT85491.1
phenylacetate-CoA oxygenase subunit PaaI.
 
 0.999
GAT85493.1
Ferredoxin.
 
 0.999
GAT85469.1
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
  
 0.995
GAT85470.1
Phenylacetic acid degradation protein PaaD.
 
 
 0.980
GAT85494.1
Crotonase.
 
 
  0.951
GAT85467.1
enoyl-CoA hydratase.
 
  
 0.883
GAT87554.1
Ferredoxin.
 
 
 0.836
GAT89637.1
Hypothetical protein.
 
  
 0.808
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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