STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT87004.1ATPase AAA. (335 aa)    
Predicted Functional Partners:
GAT87003.1
Hypothetical protein.
 
  
 0.939
GAT87001.1
Hypothetical protein.
 
     0.837
GAT87000.1
Hypothetical protein.
 
     0.814
GAT86999.1
Hypothetical protein.
   
   0.667
GAT87002.1
Hypothetical protein.
       0.653
GAT85603.1
Ornithine decarboxylase.
   
   0.565
GAT86418.1
Transglutaminase.
 
     0.552
GAT87005.1
Hypothetical protein.
       0.537
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
 0.423
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.