Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT87076.1Membrane protein. (523 aa)    
Predicted Functional Partners:
GAT87215.1
ABC transporter substrate-binding protein.
 
   0.785
GAT86554.1
Membrane protein.
  
  
  0.744
GAT87648.1
Glycosyl hydrolase.
  
     0.715
GAT86396.1
Proteinase inhibitor I25 cystatin.
  
     0.561
GAT87383.1
Hypothetical protein.
  
     0.557
GAT87077.1
Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.
       0.554
GAT86260.1
Hypothetical protein.
  
     0.540
GAT86981.1
Lipoate-protein ligase A.
  
     0.538
GAT87702.1
Histidine kinase.
  
     0.536
GAT85913.1
Membrane protein.
   
  0.523
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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