STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT87230.1LuxR family transcriptional regulator. (218 aa)    
Predicted Functional Partners:
GAT85486.1
Histidine kinase.
 
 0.996
GAT87229.1
Histidine kinase.
 0.976
GAT89554.1
ATPase.
 0.915
GAT88791.1
Hypothetical protein HMPREF9020_01034.
 0.898
GAT86228.1
Histidine kinase.
 0.895
GAT87240.1
Histidine kinase.
 0.893
GAT87602.1
Hypothetical protein.
 0.888
GAT86270.1
Hypothetical protein.
 0.886
GAT87842.1
Histidine kinase.
  
  0.876
GAT88854.1
Hypothetical protein.
  
 0.790
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
Server load: low (6%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.