Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GAT87285.1Dihydroxyacetone kinase. (578 aa)    
Predicted Functional Partners:
GAT89204.1
Dihydroxyacetone kinase.
 
 0.986
GAT87284.1
Ribose 5-phosphate isomerase.
 
  
  0.928
GAT87286.1
Short-chain dehydrogenase.
   
  0.751
GAT89205.1
Dihydroxyacetone kinase.
 
  
 
0.750
GAT87287.1
Xylose isomerase.
 
  
  0.714
GAT86628.1
Ribose 5-phosphate isomerase.
 
  
  0.697
GAT86622.1
Triosephosphate isomerase.
 
  
 0.679
GAT86630.1
Xylose isomerase.
  
  0.655
GAT85499.1
Hypothetical protein.
    
   0.618
GAT85628.1
Transcriptional regulator.
    
   0.618
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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