Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT87317.1Hypothetical protein. (430 aa)    
Predicted Functional Partners:
GAT87315.1
beta-N-acetylglucosaminidase.
 
  0.978
GAT85955.1
beta-N-acetylhexosaminidase.
 
  0.811
GAT87318.1
RpiR family transcriptional regulator.
 
    0.751
GAT87345.1
Putative beta-glucosidase.
 
 
  0.665
GAT88064.1
Beta-glucosidase.
 
 
  0.665
murQ
N-acetylmuramic acid-6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
    0.635
GAT86549.1
ATPase.
 
    0.632
GAT89300.1
beta-N-acetylhexosaminidase.
     
  0.570
GAT86682.1
ATPase.
 
    0.529
GAT85870.1
ATPase.
 
    0.521
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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