STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT87358.1Protocatechuate 4,5-dioxygenase subunit beta. (274 aa)    
Predicted Functional Partners:
GAT87359.1
Protocatechuate 4,5-dioxygenase subunit alpha.
 
 
0.998
GAT87360.1
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.997
GAT89881.1
4-hydroxybenzoate 3-monooxygenase.
 
 0.980
GAT87362.1
4-carboxymuconolactone decarboxylase.
 
 
 0.966
GAT87361.1
Alpha/beta hydrolase.
 
  
  0.936
GAT87357.1
4-hydroxyphenylpyruvate dioxygenase.
 
  
 0.884
GAT87364.1
3-oxoadipate CoA-transferase subunit A.
 
 
 0.795
GAT87365.1
3-oxoadipate CoA-transferase subunit B.
 
 
 0.792
GAT87356.1
Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family.
 
     0.724
GAT88292.1
Intradiol ring-cleavage dioxygenase.
 
  
 0.723
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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