Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT87391.1Luciferase. (388 aa)    
Predicted Functional Partners:
GAT87390.1
Amino acid-binding protein.
  
  0.878
GAT87394.1
FMNH2-utilizing oxygenase.
 
    0.829
GAT87393.1
Monooxygenase.
 
    0.825
GAT87277.1
NADPH-dependent FMN reductase.
  0.791
GAT87388.1
Amino acid ABC transporter permease.
 
     0.786
GAT87392.1
Hypothetical protein.
       0.773
GAT87395.1
Hypothetical protein.
       0.773
GAT87389.1
ABC transporter.
  
    0.757
GAT87869.1
Hypothetical protein.
 
    0.701
GAT89133.1
FMN reductase.
  
  0.590
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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