Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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[Homology]
Score
GAT87396.1Alpha integrin. (385 aa)    
Predicted Functional Partners:
GAT85770.1
Cytochrome P450.
   
  0.571
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
     
  0.558
GAT87397.1
Hypothetical protein.
       0.486
GAT86042.1
Alpha integrin.
  
 
 
0.463
GAT85848.1
Hypothetical protein.
  
 
 
0.458
GAT89371.1
Hypothetical protein M707_19160.
  
 
 
0.453
GAT85836.1
Membrane protein.
  
 
   0.450
GAT88436.1
Hypothetical protein M707_19160.
  
 
 
0.418
secY
Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.411
GAT86984.1
Hypothetical protein.
  
 
  0.407
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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